Editing an externally uploaded file

STL are harder to work with in Shapr because STL is not cad format but mesh. Like photo is pixels and illustration app is vector.

You can use Freecad to convert your STL to STEP, you can easily sketch your holes and get some edibility but not all.

Also even without conversion you can still make holes. You will need to make a 3d model of the hole separately and do a boolean subtract, that will give you the hole but you need to eyeball the location.

Here is tutorial on STL to STEP Conversion.