I’ve been struggling with this a few times recently. I will make changes in the history panel for one reason or another, then go through and fix missing references to planes, constraints etc. but sometimes this happens:
I’ve just re-opened the project to look closer. The warning is now gone! I’m not sure if I did something accidentally or if there is a bug.
The screenshot I attached is with the sketch open though, but maybe there’s somewhere harder to see that I didn’t notice. I will need to revisit this next time this happens.